DESeq2 (version 1.12.3)

normTransform: Normalized counts transformation

Description

A simple function for creating a DESeqTransform object after applying: f(count + pc).

Usage

normTransform(object, f = log2, pc = 1)

Arguments

object
a DESeqDataSet object
f
a function to apply to normalized counts
pc
a pseudocount to add to normalized counts

See Also

varianceStabilizingTransformation, rlog