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FunCluster (version 1.09)

Functional Profiling of Microarray Expression Data

Description

FunCluster performs a functional analysis of microarray expression data based on Gene Ontology & KEGG functional annotations. From expression data and functional annotations FunCluster builds classes of putatively co-regulated biological processes through a specially designed clustering procedure.

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Version

Install

install.packages('FunCluster')

Monthly Downloads

31

Version

1.09

License

GPL (>= 2)

Maintainer

Corneliu Henegar

Last Published

July 23rd, 2012

Functions in FunCluster (1.09)

ChargerKegg

Internal routine or variable
AnnotationIndirecte

Internal routine or variable
annot.date

Internal routine or variable
adipose

Gene Expression in Human White Adipose Tissue
Annotations

Functional Profiling of Microarray RNA Expression Data
clusterm.cc

Internal routine or variable
annotate

Internal routine or variable
cluster.c

Internal routine or variable
annot.list

Internal routine or variable
clusterm.cs

Internal routine or variable
fdr.basic

Internal routine or variable
fdr.adjust

Internal routine or variable
fdr.master

Internal routine or variable
down

Internal routine or variable
FunCluster.R-package

Functional Profiling of Microarray Expression Data
f.version

Internal routine or variable
gene.correl

Internal routine or variable
filter.genes

Internal routine or variable
fdr

Internal routine or variable
FunCluster

Functional Profiling of Microarray Expression Data
HS.GO.IND.BP.file.annot

Internal routine or variable
HS.GO.DIR.MF.file.annot

Internal routine or variable
goAndLL

Internal routine or variable
GO.terms.name

Internal routine or variable
HS.locus.name

Internal routine or variable
insulin

Insulin Coordinated Regulation of Gene Expression in Human Skeletal Muscle
GeneInfoSC

Internal routine or variable
GeneInfo

Internal routine or variable
MakeGoTerms

Internal routine or variable
MakeLocusNames

Internal routine or variable
MM.locus.name

Internal routine or variable
HS.GO.IND.CC.file.annot

Internal routine or variable
pclust

Internal routine or variable
MiseEnFormeKeggSC

Internal routine or variable
MiseEnFormeKegg

Internal routine or variable
HS.GO.IND.MF.file.annot

Internal routine or variable
SC.GO.DIR.BP.file.annot

Internal routine or variable
resterm

Internal routine or variable
MM.GO.IND.CC.file.annot

Internal routine or variable
MM.GO.IND.MF.file.annot

Internal routine or variable
ref.list

Internal routine or variable
resclust

Internal routine or variable
SC.GO.DIR.MF.file.annot

Internal routine or variable
prop.alt

Internal routine or variable
SC.GO.DIR.CC.file.annot

Internal routine or variable
MM.GO.DIR.CC.file.annot

Internal routine or variable
preliminary

Internal routine or variable
MM.GO.DIR.BP.file.annot

Internal routine or variable
up

Internal routine or variable
TroisiemeFiltrage

Internal routine or variable
genes.lst

Internal routine or variable
GO.terms.hierarchy

Internal routine or variable
SC.GO.IND.MF.file.annot

Internal routine or variable
MakeGoHierarchy

Internal routine or variable
KEGG.terms.name

Internal routine or variable
MakeCorrespondanceLLGO

Internal routine or variable
Kegg

Internal routine or variable
SC.locus.name

Internal routine or variable
SC.KEGG.file.annot

Internal routine or variable
SC.locus.cyto

Internal routine or variable
HS.KEGG.file.annot

Internal routine or variable
HS.locus.cyto

Internal routine or variable
MM.GO.IND.BP.file.annot

Internal routine or variable
MM.GO.DIR.MF.file.annot

Internal routine or variable
MM.KEGG.file.annot

Internal routine or variable
MM.locus.cyto

Internal routine or variable
SC.GO.IND.BP.file.annot

Internal routine or variable
SC.GO.IND.CC.file.annot

Internal routine or variable
term.compare

Internal routine or variable
storey

Internal routine or variable
HS.GO.DIR.CC.file.annot

Internal routine or variable
HS.GO.DIR.BP.file.annot

Internal routine or variable
location.analysis

Internal routine or variable
pvalues

Internal routine or variable
pterm

Internal routine or variable
main.loop

Internal routine or variable