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GMD (version 0.3.3)
Generalized Minimum Distance of distributions
Description
GMD is a package for non-parametric distance measurement between two discrete frequency distributions.
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Version
Version
0.3.3
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Install
install.packages('GMD')
Monthly Downloads
51
Version
0.3.3
License
GPL (>= 2)
Maintainer
Xiaobei Zhao
Last Published
December 27th, 2016
Functions in GMD (0.3.3)
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bedgraph.to.depth
Convert a BedGraph fiel to a vector of depth-like signals
cage
CAGE Data: Transcription Start Site Distributions (TSSDs) by CAGE tags
equalize.list
Make members of a list equal size
chipseq
ChIP-seq data: ChIP-seq Enrichment around TSSs
gmdm
Generalized Minimum Distance Matrix
ghist
Generalized Histogram Computation
get.sep
Get row or column lines of separation for heatmap.3
GMD-package
The Package for Generalized Minimum Distance (GMD) Computation
elbow
The "Elbow" Method for Clustering Evaluation
css
Clustering Sum-of-Squares for clustering evaluation
plot.gmdp
Plot function for class gmdp
legend
Add Legends to Plots
plot.mhist
S3 method for class `mhist'.
plot.gmdm
S3 method for class `gmdm'
heatmap.3
Enhanced Heatmap Representation with Dendrogram and Partition
gmdp
Generalized Minimum Distance between a pair of distributions
ts2df
Convert time series to data frame
mhist.summary
Bin-wise summary of histograms
gdist
Generalized Distance Matrix Computation