RDocumentation
Moon
Learn R
Search all packages and functions
Geneland (version 4.0.6)
Detection of Structure from Multilocus Genetic Data
Description
Stochastic simulation and MCMC inference of structure from genetic data.
Copy Link
Copy
Link to current version
Version
Version
4.0.6
4.0.5
Down Chevron
Install
install.packages('Geneland')
Monthly Downloads
435
Version
4.0.6
License
GPL
Maintainer
Gilles Guillot
Last Published
September 1st, 2016
Functions in Geneland (4.0.6)
Search functions
Geneland.GUI
Graphical interface for package Geneland
Fstat
Computes F statistics on a population genetics dataset given as R object
Fstat.output
Computes F statistics on the output of an inference by MCMC simulation
coordinates
Example of coordinate file
FormatGenotypes
Formatting file of genotype data.
gl2gp
Geneland to Genepop conversion
EstimateFreqNA
Estimate frequencies of null alleles.
genotypes
Example of coordinate file
HZ
Estimate parameters of the hybrid zone model by MCMC simulation
Geneland-package
Simulation and inference for subdivided populations
PlotDrift
Plot the drift factors
PlotFreqA
Plots allele frequencies in ancestral population along the MCMC run and optionally prints it
PlotFreq
Plot the trace of allele frequencies in present time population and optionnaly print it.
Plotnpop
Plot of number of populations along the MCMC run
PlotTessDyn
Plot tessellation along an MCMC run.
PlotTessellation
Maps of posterior probability of membership
Plotntile
Plot of number of tiles along the MCMC run
nullify
Simulates null alleles
PosteriorMode
Map of mode of posterior distribution of population membership
MCMC
Markov Chain Monte-Carlo inference of clusters from genotpype data
show.simdata
Graphical display of data simulated by simdata
PostProcessChain
Computation for maps of posterior probability of population membership
simFmodel
Simulation of multi-locus genetic data from the spatial F-model
show.estimate.hz
Show estimate of parameters of the hybrid zone model by MCMC simulation
simdata
Simulation of georeferenced genotypes under an IBD + barrier model