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HMPTrees (version 1.4)
Statistical Object Oriented Data Analysis of RDP-Based Taxonomic Trees from Human Microbiome Data
Description
Tools to model, compare, and visualize populations of taxonomic tree objects.
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Version
Version
1.4
1.3
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Install
install.packages('HMPTrees')
Monthly Downloads
158
Version
1.4
License
Apache License (== 2.0)
Maintainer
Berkley Shands
Last Published
July 5th, 2017
Functions in HMPTrees (1.4)
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generateTree
Generate Test Trees
getMLEandLoglike
Get MLE and Log Likelihood of a Data Set
checkTreeValidity
Check Validity of an RDP-Based Taxonomic Tree
compareTwoDataSets
Likelihood-Ratio-Test Statistics to Compare the Distribution of 2 Sets of RDP-Based Taxonomic Trees
HMPTrees-internal
Internal Functions
HMPTrees-package
Object Oriented Data Analysis of Taxonomic Trees
mergeDataSets
Merge Multiple Data Sets
pairedCompareTwoDataSets
Likelihood-Ratio-Test Statistics to Compare the Distribution of 2 Paired Sets of RDP-Based Taxonomic Trees
throat
Throat Data Set
trimToTaxaLevel
Trim a Tree to a Given Level
displayLegend
Displays Tree Plot Legend
formatData
Formats a Data Set
saliva
Saliva Data Set
stool
Stool Data Set
createAndPlot
Create and Plot a Tree from a Data Set
createTrees
Create a Tree Object
plotTree
Plots a Tree Object
plotTreeDataMDS
Plot an MDS Plot of a Group of Trees