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PHYLOGR (version 1.0.11)
Functions for Phylogenetically Based Statistical Analyses
Description
Manipulation and analysis of phylogenetically simulated data sets and phylogenetically based analyses using GLS.
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1.0.11
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Install
install.packages('PHYLOGR')
Monthly Downloads
277
Version
1.0.11
License
GPL (>= 2)
Maintainer
Ramon Diaz-Uriarte
Last Published
April 14th, 2020
Functions in PHYLOGR (1.0.11)
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print.summary.phylog
Printing summaries of PHYLOGR statistical functions
prcomp.phylog
Principal Components Analysis from Simulated Data Sets
cancor.phylog
Canonical Correlation Analysis from Simulated Data Sets
Lacertid.varcov
Variance-covariance matrix for lacertids from Bauwens and Diaz-uriarte (1997)
read.phylip.data
Read Phylip Infile Data Files
cor.origin
Correlation Through the Origin
GarlandJanis.Original
Garland \& Janis's 1993 data on mammalian running speed and limb length
GarlandJanis.IC
Independet contrasts for Garland \& Janis data set
matrix.D
Produce the Matrix D of Garland and Ives (2000) for GLS
Lacertid.Original
Bauwens and Diaz-Uriarte (1997) lacertid data
Lacertid.IC
Independet contrasts for Bauwens and Diaz-Uriarte (1997) lacertid data set
read.phylog.matrix
Read a Phylogenetic Covariance Matrix
SimulExample
A simulated data set
plot.phylog.cancor
Plot a phylog.cancor object
summary.phylog.cancor
Summarize a phylog.cancor object
lm.phylog
Linear Models from Simulated Data Sets
read.pdi.data
Read Pdi Data Files
summary.phylog.prcomp
Summarize a phylog.prcomp object
summary.phylog.lm
Summarize a phylog.lm object
phylog.gls.fit
Phylogenetically-Based GLS Model Fitting
plot.phylog.lm
Plot a phylog.lm object
plot.phylog.prcomp
Plot a phylog.prcomp object
read.sim.data
Read Sim Files From PDSIMUL
read.inp.data
Read Inp Data Files
GarlandJanis.varcov
Phylogenetic variance-covariance matrix for Garland \& Janis (1993).
Helper.functions
Helper functions