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affyPara (version 1.32.0)
Parallelized preprocessing methods for Affymetrix Oligonucleotide Arrays
Description
The package contains parallelized functions for exploratory oligonucleotide array analysis. The package is designed for large numbers of microarray data.
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Version
Version
1.32.0
1.30.0
1.28.0
1.26.0
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Version
1.32.0
License
GPL-3
Maintainer
Markus Schmidberger
Last Published
March 25th, 2013
Functions in affyPara (1.32.0)
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bgCorrectPara
Parallelized Background Correction
distributeFiles
Distribute files to slaves
readAffybatchPara
Parallelized Read-AffyBatch function
computeExprSetPara
Parallel generate a set of expression values
splitObjects
Functions to split objects into parts
normalizeAffyBatchConstantPara
Parallelized scaling normalization
mergeSplitObjects
Merge a list of split objects
normalizeAffyBatchLoessIterPara
Parallelized partial loess normalization with permutation
boxplotPara
Parallelized Box Plots for Microarray Data
normalizeAffyBatchInvariantsetPara
Parallelized Invariante Set normalization
rmaPara
Parallelized PMA preprocessing
snow-startstop
Starting and Stopping SNOW Clusters
vsnInputPara
Class to contain input data and parameters for parallel vsn functions
preproPara
Parallelized preprocessing
vsnPara
Parallel fir of the vsn model
removeDistributedFiles
Remove distributed files from slaves
qa
Parallel Quality Assessment Summary
normalizeAffyBatchQuantilesPara
Parallelized quantile normalization
MAplotPara
Parallelized relative M vs. A plots for Microarray Data
normalizeAffyBatchLoessPara
Parallelized loess normalization