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affypdnn (version 1.46.0)
Probe Dependent Nearest Neighbours (PDNN) for the affy package
Description
The package contains functions to perform the PDNN method described by Li Zhang et al.
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Version
1.46.0
1.44.0
1.42.0
1.40.0
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Version
1.46.0
License
LGPL
Maintainer
Laurent Gautier
Last Published
September 22nd, 2009
Functions in affypdnn (1.46.0)
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expressopdnn
Position Dependant Nearest Neighbors model for affy
matplotProbesPDNN
Plot the PDNN computed probe intensities
params.dilution
Parameters for the Dilution dataset
pdnn.params.chiptype
A function to fit PDNN parameters
transform.ProbeSet
A function to transform a ProbeSet
find.params.pdnn
A function to find the experiment specific PDNN parameters
hgu133a.pdnn.params
Chip-type specific data
generateExprVal.method.pdnn
Compute PM correction and summary expression value