Internal analogue Functions
Bayes factors
Analogue matching
North American Modern Pollen Database
Abernethy Forest Pollen Sequence
Analogue and weighted averaging methods for palaeoecology
Bootstrap estimation and errors
Root mean square error of prediction
Imbrie and Kipp foraminifera training set
Palaeoecological stratigraphic diagrams
Caterpillar plot of species' WA optima and tolerance range.
Close modern analogues
Deshrinking techniques for WA transfer functions
Bootstrap estimation and errors for WA models
Lattice density plot for residual lengths
Cross-validation of palaeoecological transfer function models
Merge species data sets on common columns (species)
Fitted values for the training set from logistic regression
models
Compare proxies across two data sets
Select taxa (variables) on basis of maximum abundance attained
and number of occurrences.
Histogram plot for residual lengths
Panel function for stratigraphic diagrams
Fused dissimilarities
Prinicpal component regression transfer function models
Extract minimum dissimilarities
Logistic regression models for assessing analogues/non-analogues
Calculate Hill's N2 diversity measure
Monte Carlo simulation of dissimilarities
Loess smooths to stratigraphic diagrams
Weighted averaging optima and tolerance ranges
Extract and set the number of analogues
Positions of samples along a unit-length ordination gradient.
Bootstrap object description
Plot ROC curves and associated diagnostics
Plot method for residual lengths
Lattice histogram plot for residual lengths
Modern Analogue Technique transfer function models
Extract dissimilarity coefficients from models
Plot a fitted principal curve in PCA space
Predicted values from a principal components regression
Number of samples per gradient segments
Plot species responses along gradients or latent variables
Predict method for Modern Analogue Technique models
Flexibly calculate dissimilarity or distance measures
Plot of minimum dissimilarity per sample
Plots the distribution of extracted dissimilarities
Plot diagnostics for a weighted averaging model
Plot diagnostics for a mat object
Transfer function model performance statistics
Fits a principal curve to m-dimensional data
Select samples from along an environmental gradient
Residuals of a principal curve fit.
Standard error of MAT fitted and predicted values
Squared residual length diagnostics
Smoother plugin function for use in fitting a principal curve
Summarise MAT model predictions
Species responses along gradients.
Posterior probability of analogue-ness for fossil samples
Plot distribution of samples along gradient
Predict from a weighted average model
Summarise the extraction of close modern analogues
SWAP sub-fossil diatom and pH training set
Summarise Modern Analogue Technique models
Predict news locations \& fitted values on a principal curve
Summarise analogue matching results
Plot Monte Carlo simulated dissimilarity distributions
Weighted correlation test of WA reconstruction
scores
method for principal curve objects of
class "prcurve"
.Rank correlation between environmental and species dissimilarities.
Stratigraphic plots of palaeoenvironmental reconstructions
Produces plots of analogue logistic regression models
Round Loch of Glenhead Diatoms
ROC curve analysis
Morphological data for ten taxa of the genus Tortula
Timetracks of change in species composition
Screeplots of model results
Common data transformations and standardizations
Summarise bootstrap resampling for MAT models
SWAP sub-fossil diatom and pH training set
Variance explained by ordination axes
Weighted averaging transfer functions