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clValid (version 0.7)
Validation of Clustering Results
Description
Statistical and biological validation of clustering results. This package implements Dunn Index, Silhouette, Connectivity, Stability, BHI and BSI. Further information can be found in Brock, G et al. (2008)
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Version
Version
0.7
0.6-9
0.6-8
0.6-7
0.6-6
0.6-4
0.6-2
0.6-1
0.5-7
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0.5-3
0.5-2
0.5-1
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Install
install.packages('clValid')
Monthly Downloads
1,989
Version
0.7
License
LGPL-3
Maintainer
Vasyl Pihur
Last Published
February 14th, 2021
Functions in clValid (0.7)
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mouse
Mouse Mesenchymal Cells
dunn
Dunn Index
BHI
Biological Homogeneity Index
clValid-internal
Internal clValid functions
stability
Stability Measures
BSI
Biological Stability Index
clValid-class
Class "clValid"
getRanksWeights
Extract ranks and weights from clValid object
connectivity
Connectivity Measure
annotationListToMatrix
Change annotation list to matrix
readAnnotationFile
Read in biological annotation files from external file
clValid
Validate Cluster Results
plot.sota
Plot Function for a SOTA Object
sota
Self-organizing Tree Algorithm (SOTA)
print.sota
Print Function for a SOTA Object