Learn R Programming
⚠️There's a newer version (1.1.4) of this package.Take me there.

epicontacts (version 1.1.3)

Handling, Visualisation and Analysis of Epidemiological Contacts

Description

A collection of tools for representing epidemiological contact data, composed of case line lists and contacts between cases. Also contains procedures for data handling, interactive graphics, and statistics.

Copy Link

Version

Install

install.packages('epicontacts')

Monthly Downloads

637

Version

1.1.3

License

GPL (>= 2)

Maintainer

Finlay Campbell

Last Published

March 28th, 2023

Functions in epicontacts (1.1.3)

transp

Color tools and palettes for epicontacts
get_clusters

Assign cluster IDs to epicontacts data
graph3D

Interactive 3D Force-directed graph from epicontacts object
get_pairwise

Characterise contacts by comparing case attributes
plot.epicontacts

Plot epicontacts objects
make_epicontacts

Read linelist and contact data
print.summary_epicontacts

Print method for summary_epicontacts objects
[.epicontacts

Subset epicontacts objects based on case identifiers
subset_clusters_by_id

Subset epicontacts by case-specified clusters
print.epicontacts

Print method for epicontacts objects
subset.epicontacts

Subset an epicontact object by factors
thin

Thin data to retain matching linelist / contacts
subset_clusters_by_size

Subset clusters from epicontacts object by cluster size
summary.epicontacts

Summary method for epicontacts objects
vis_epicontacts

Plot epicontacts objects using visNetwork
as.igraph.epicontacts

Create igraph object from contact data
codeawesome

Reference codes for fontawesome
get_degree

Find node degree for epicontacts objects
get_id

Access unique identifiers in epicontacts objects