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hapsim (version 0.31)
Haplotype Data Simulation
Description
Package for haplotype-based genotype simulations. Haplotypes are generated such that their allele frequencies and linkage disequilibrium coefficients match those estimated from an input data set.
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Version
Version
0.31
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Install
install.packages('hapsim')
Monthly Downloads
152
Version
0.31
License
GPL (>= 2)
Maintainer
Apostolos Dimitromanolakis
Last Published
June 7th, 2017
Functions in hapsim (0.31)
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checkpd
Checks that a covariance matrix is positive definite
cor2dprime
Correlations to D' coefficients conversion
mergemats
Merges two LD matrices
mse
Mean Square Error
haplofreqs
Haplotype frequencies
haplosim
Haplotype data simulator
ldplot
LD plot
makepd
Makes a matrix positive definite
cortocov
Correlation to covariance conversion
covtocor
Covariance to correlation conversion
divlocus
Diversity score
haplodata
Haplotype object creator
ACEdata
ACE data set
allelefreqs
Estimates allele frequencies
sumsqscale
Scales a matrix