Combine person-specific covariates to pair-specific
plot an ibdreg object
find the rows of a data frame with the minimum pvalue
cumulative probability of a chibar distribution
Plot unconstrained and constrained linkage tests to
indicate areas of unexpected allele sharing
Linkage tests for relative pair groups
Merge ibd and covariate data
Minimize Inequality Constrained Mahalanobis Distance
Plot a linkage.tests object
Plot a linkage.all object
Simulate Marker Propagation
set-up functions for sim.mark.prop
track system resources
Print a nice banner
Create an ibd.var object via simulations using gene-dropping
Plot the -log10 of pvalues
Print a linkage.tests object
print an ibd.var object
print and ibdreg object
Print or summarize a linkage.all object
Compute Generalized Inverse of Input Matrix
Create an ibd.dat object
create an ibd.var object
Create and return a data.frame with ibd data from merlin
calculate moments (mean, variance) for simulated ibd vectors
Compute mixture proportions, w, for mixture chi-square
distribution
create a data frame for relative pairs
align ibd.var object with relative pairs within pairs.frame object
Linkage test statistics for ALL relative pairs
Regression Methods to Test for Linkage With Covariates