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ncdfFlow (version 2.18.0)
ncdfFlow: A package that provides HDF5 based storage for flow cytometry data.
Description
Provides HDF5 storage based methods and functions for manipulation of flow cytometry data.
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Version
Version
2.18.0
2.16.0
2.14.2
2.12.0
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Version
2.18.0
License
Artistic-2.0
Maintainer
MJiang
Last Published
January 1st, 1970
Functions in ncdfFlow (2.18.0)
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ncdfFlowSet-class
a class for storing flow cytometry raw data in HDF5 format
getFileName
get the cdf file name associated with ncdfFlowSet object
[,ncdfFlowSet,ANY-method
subsetting by sampleNames,channels(not for events) methods
split,ncdfFlowList,factor-method
split a
ncdfFlowSet
object.
clone.ncdfFlowSet
Clone a ncdfFlowSet
save_ncfs
save/load a ncdfFlowSet object to/from disk.
lapply,ncdfFlowList-method
lapply method for ncdfFlowList
ncfsApply,ncdfFlowSet-method
apply method for ncdfFlowSet (for internal use)
rbind2,ncdfFlowList,ANY-method
combine multiple ncdfFlowSet objects into one
ncdfFlow
ncdfFlow: A package that provides CDF storage based flow cytometry data analysis.
replacement method for ncdfFlowSet
write the flow data from a
flowFrame
to
ncdfFlowSet
subset.ncdfFlowSet
subset the ncdfFlowSet/ncdfFlowList based on 'pData'
as.flowSet
convert from a
ncdfFlowSet
to a
flowSet
ncdfFlowSet,flowSet-method
create ncdfFlowSet from flowSet
[[,ncdfFlowSet,ANY-method
extract a
flowFrame
object from
ncdfFlowSet
getIndices,ncdfFlowSet,character-method
getIndices
extracts the event indices of one or multiple samples from ncdfFlowSet
unlink,ncdfFlowSet-method
delete the cdf file associated with the ncdfFlowSet object
ncdfFlowList-class
a class that stores multiple ncdfFlowSet objects
densityplot,formula,ncdfFlowSet-method
flowViz plot methods.
Subset,ncdfFlowSet,filterResultList-method
subset a ncdfFlowSet by filter
filter,ncdfFlowList,filter-method
Accessors compatible with those for
flowSet
read.ncdfFlowSet
create ncdfFlowSet from FCS files