phylosim (version 3.0.5)

Flexible Simulations of Biological Sequence Evolution

Description

An extensible object-oriented framework for the Monte Carlo simulation of sequence evolution written in 100 percent R. It is built on the top of the R.oo and ape packages and uses Gillespie's direct method to simulate substitutions, insertions and deletions. Citation: Botond Sipos, Tim Massingham, Gregory E Jordan and Nick Goldman (2011) PhyloSim - Monte Carlo simulation of sequence evolution in the R statistical computing environment .

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Install

install.packages('phylosim')

Monthly Downloads

172

Version

3.0.5

License

GPL (>= 3)

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Last Published

November 21st, 2019

Functions in phylosim (3.0.5)