rphast (version 1.6.9)

Interface to 'PHAST' Software for Comparative Genomics

Description

Provides an R interface to the 'PHAST'() software (Phylogenetic Analysis with Space/Time Models). It can be used for many types of analysis in comparative and evolutionary genomics, such as estimating models of evolution from sequence data, scoring alignments for conservation or acceleration, and predicting elements based on conservation or custom phylogenetic hidden Markov models. It can also perform many basic operations on multiple sequence alignments and phylogenetic trees.

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Install

install.packages('rphast')

Monthly Downloads

101

Version

1.6.9

License

BSD_3_clause + file LICENSE

Maintainer

Last Published

February 11th, 2018

Functions in rphast (1.6.9)