List of 544 physicochemical and biological properties for the 20 amino-acids
Converts amino-acid one-letter code into the three-letter one
Constructor for class alignment
Sequence coming from a remote ACNUC data base
Computing an IUPAC nucleotide symbol
Estimation of baseline value
Aerobic cost of amino-acids in Escherichia coli and G+C classes
Expansion of IUPAC nucleotide symbols
Codon Adaptation Index (CAI) w tables
To Compute the Theoretical Isoelectric Point
Consensus and profiles for sequence alignments
The number of free lists available and annotation lines in an ACNUC server
Composition of dimer/trimer/etc oligomers
Base composition in ssDNA for 7 bacterial DNA
as.matrix.alignment
open and close a remote access to an ACNUC database
conversion of a vector of chars into a string
Codon Adaptation Index
To close a remote ACNUC database
Class for DNA sequence in Fasta Format
Converts amino-acid three-letter code into the one-letter one
Returns a socket to the last opened database
AA sequence in Fasta Format
Class for sub-sequences
Cleveland plot for codon usage tables
To use a standard color with an alpha transparency chanel
complements a nucleic acid sequence
Example of results obtained after a call to read.alignment
Graphical representation for nucleotide skews in
prokaryotic chromosomes.
Extraction of breakpoint positions on the
rearranged nucleotide skews.
999 coding sequences from E. coli
Graphical representation for rearranged nucleotide skews in
prokaryotic chromosomes.
Graphical representation of a recstat analysis.
GC content and aerobiosis in bacteria
GC content and temperature in bacteria
Get the exponential growth of nucleic acid database content
To get available subsequence types in an opened ACNUC database
To get the rank of a list from its name
Generic Function to get sequence annotations
Generic function to translate coding sequences into proteins
To Convert a forensic microsatellite allele name into its length in base pairs
To get the count of existing lists and all their ranks on server
Fast Allele in Common Count
Conversion of GenBank file into fasta file
Conversion of a GenBank format file into a glimmer-like
one. Eukaryotic version.
Asks for information about an ACNUC list of specified rank
Conversion of a GenBank format file into a glimmer-like one
Sequence permutation according to several different models
Extraction of Peak locations, Heights and Surfaces from ABIF data
Draws a circle
Number of subsequences in an ACNUC list
To select a database structured under ACNUC and located on the web
Generic function to get the location of subsequences on the parent sequence
Generic function to get the length of sequences
To see what's inside the package seqinr
Fragment of the E. coli chromosome
Extract sequence identified by name or by number from an ACNUC server
Generic function to get keywords associated to sequences
Generic function to extract sequence fragments
Get help from an ACNUC server
To create on server an ACNUC list from data lines sent by client
function to convert the numeric encoding of a DNA sequence
into a vector of characters
Utility function to parse answers from an ACNUC server
Pairwise Distances from Aligned Protein or DNA/RNA Sequences
pK values for the side chain of charged amino acids from various sources
Prediction of origin and terminus of replication in bacteria.
Mean zscore on 242 complete bacterial chromosomes
Distribution of bacterial genome size from GOLD
To extract the sequences information of a sequence or a list of sequence in different formats
Example of results obtained after a call to read.alignment
Detection of replication-associated effects on base composition asymmetry in
prokaryotic chromosomes.
To Plot Subsequences on the Parent Sequence
Low level function to read ACNUC SMJYT index files
GS500LIZ size standards
Example of results obtained after a call to read.alignment
Identifiler allele names
Dot Plot Comparison of two sequences
Example of results obtained after a call to read.alignment
Modification of an ACNUC list
Representation of Amplicon Size Ranges of a STR kit.
Electrophoregram plot for ABIF data
Select annotation lines in an ACNUC database
Import GenMapper Bins configuration file
Generic function to get sequence data
read FASTA formatted files
Read ABIF formatted files
Generic function to get the names of sequences
Text representation of a sequence from an ACNUC server
Expected numeric results for Ka and Ks in extreme cases
Get the ACNUC number of a sequence from its name or accession number
Print method for objects from class SeqAcnucWeb
Ka and Ks, also known as dn and ds, computation
Import GenMapper Panels configuration file
Reverse alignment - from protein sequence alignment to nucleic sequence alignment
Three aligned nucleic acid sequences
Description of databases known by an ACNUC server
Low level function to get the record count of the specified ACNUC
index file
Rename an R object
Stutter ratio estimation
Prediction of Coding DNA Sequences.
Exchange two R objects
Random synonymous coding sequence generation
Synonymous codons
Total number of residues in an ACNUC list
simple numerical encoding of a DNA sequence.
Example of results obtained after a call to read.alignment
Save sequence names or accession numbers into a file
Simple plot of an allelic ladder from ABIF data
Protein Molecular Weight
Scans databases for a given sequence accession number
To get all words from an alphabet.
Read aligned sequence files in mase, clustal, phylip, fasta or msf format
to plot genetic code as in textbooks
A toy example of codon counts in three coding sequences
Tests if regions located between Stop codons contain putative CDSs.
Ergheaf gur EBG-13 pvcurevat bs n fgevat
Print method for objects from class qaw
Zscore on three strains of Prochlorococcus marinus
To get a list of sequence names from an ACNUC data base located on the web
conversion of a string into a vector of chars
Biological Sequences Retrieval and Analysis
Sets the name of an ACNUC list identified by its rank
Statistical over- and under- representation of dinucleotides in a
sequence
Translate nucleic acid sequences into proteins
Weight of each synonymous codon
A toy example of amino-acid counts in three proteins
Write sequence(s) into a file in fasta format
Trim leading and/or trailing spaces in strings
Codon usage indices
Tests if regions located between Stop codons contain putative CDSs.
Light absorption by the water column
split a sequence into sub-sequences
Positions of possibly degenerated motifs within sequences
Utility function to escape LaTeX special characters present in a string
Expected numeric results for Ka and Ks computation
Vectors of coefficients to compute linear forms.
Calculates the fractional G+C content of nucleic acid sequences.
Forensic Genetic Profile Raw Data
Forensic Genetic Profile Allelic Ladder Raw Data
utility data for seqinr
To Get Some Protein Statistics