Dan Tenenbaum

Dan Tenenbaum

3 packages on CRAN

8 packages on Bioconductor

doParallel

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Provides a parallel backend for the %dopar% function using the parallel package.

AnnotationHub

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This package provides a client for the Bioconductor AnnotationHub web resource. The AnnotationHub web resource provides a central location where genomic files (e.g., VCF, bed, wig) and other resources from standard locations (e.g., UCSC, Ensembl) can be discovered. The resource includes metadata about each resource, e.g., a textual description, tags, and date of modification. The client creates and manages a local cache of files retrieved by the user, helping with quick and reproducible access.

AnnotationHubData

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These recipes convert a wide variety and a growing number of public bioinformatic data sets into easily-used standard Bioconductor data structures.

AnnotationHubServer

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AnnotationHub Server component

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AnnotationHub Server component

BiocCloud

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Convenience functions for the Bioconductor Amazon Machine Image

BiocInstaller

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This package is used to install and update Bioconductor, CRAN, and (some) github packages.

KEGGREST

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A package that provides a client interface to the KEGG REST server. Based on KEGGSOAP by J. Zhang, R. Gentleman, and Marc Carlson, and KEGG (python package) by Aurelien Mazurie.

remotes

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Download and install R packages stored in 'GitHub', 'BitBucket', or plain 'subversion' or 'git' repositories. This package is a lightweight replacement of the 'install_*' functions in 'devtools'. Indeed most of the code was copied over from 'devtools'.

RInno

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Installs shiny apps packaged as stand-alone Electron apps using Inno Setup, an open source software that builds installers for Windows programs <http://www.jrsoftware.org/ishelp/>.

RGalaxy

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Given an R function and its manual page, make the documented function available in Galaxy.