Daniel Greene

BeviMed

Bayesian inference procedures for evaluating evidence of involvement of variants in Mendelian disord...

R-interface to C++ implementation of the rank/score permutation based GSEA test (Subramanian et al 2...

Collection of functions for manipulating sets of HPO terms and
plotting them with a various options.

Functions for reading ontologies into R as lists and manipulating sets of ontological terms.

Functions for visualising sets of ontological terms using the 'graphviz' layout system.

Functions for calculating semantic similarities between ontological terms or sets of ontological ter...

Plots matrices of colours as grids of coloured squares - aka heatmaps,
guaranteeing legible row and ...