Florian Hahne

Florian Hahne

1 packages on CRAN

10 packages on Bioconductor

biocGraph

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This package provides examples and code that make use of the different graph related packages produced by Bioconductor.

caFlowQ

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This packages wraps core functionality of the flowQ package into a single R workflow, and provides TypeInfo for the argument and return types. This facilitates use of the package in RWebServices.

domainsignatures

bioconductor
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Find significantly enriched gene classifications in a list of functionally undescribed genes based on their InterPro domain structure.

Gviz

bioconductor
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Genomic data analyses requires integrated visualization of known genomic information and new experimental data. Gviz uses the biomaRt and the rtracklayer packages to perform live annotation queries to Ensembl and UCSC and translates this to e.g. gene/transcript structures in viewports of the grid graphics package. This results in genomic information plotted together with your data.

prada

bioconductor
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Tools for analysing and navigating data from high-throughput phenotyping experiments based on cellular assays and fluorescent detection (flow cytometry (FACS), high-content screening microscopy).

curvHDR

cran
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Filtering, also known as gating, of flow cytometry samples using the curvHDR method, which is described in Naumann, U., Luta, G. and Wand, M.P. (2010) <DOI:10.1186/1471-2105-11-44>.

cellHTS2

bioconductor
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This package provides tools for the analysis of high-throughput assays that were performed in microtitre plate formats (including but not limited to 384-well plates). The functionality includes data import and management, normalisation, quality assessment, replicate summarisation and statistical scoring. A webpage that provides a detailed graphical overview over the data and analysis results is produced. In our work, we have applied the package to RNAi screens on fly and human cells, and for screens of yeast libraries. See ?cellHTS2 for a brief introduction.

flowStats

bioconductor
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Methods and functionality to analyse flow data that is beyond the basic infrastructure provided by the flowCore package.

plateCore

bioconductor
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Provides basic S4 data structures and routines for analyzing plate based flow cytometry data.

Rbowtie

bioconductor
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This package provides an R wrapper around the popular bowtie short read aligner and around SpliceMap, a de novo splice junction discovery and alignment tool. The package is used by the QuasR bioconductor package. We recommend to use the QuasR package instead of using Rbowtie directly.

Rgraphviz

bioconductor
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Interfaces R with the AT and T graphviz library for plotting R graph objects from the graph package.