Ji-Hyung Shin

Ji-Hyung Shin

3 packages on CRAN

luca

cran
99.99th

Percentile

Likelihood inference in case-control studies of a rare disease under independence or simple dependence of genetic and non-genetic covariates

trioGxE

cran
99.99th

Percentile

The package contains functions that 1) estimates gene-environment interaction between a SNP and a continuous non-genetic attribute by fitting a generalized additive model to case-parent trio data, 2) produces graphical displays of estimated interaction, 3) performs permutation test of gene-environment interaction; 4) simulates informative case-parent trios.

LDheatmap

cran
99.99th

Percentile

Produces a graphical display, as a heat map, of measures of pairwise linkage disequilibria between SNPs. Users may optionally include the physical locations or genetic map distances of each SNP on the plot. Users should note that the imported package 'snpStats' and the suggested packages 'rtracklayer', 'GenomicRanges', 'GenomInfoDb' and 'IRanges' are all BioConductor packages <https://bioconductor.org>.