Jonathan Lees

Jonathan Lees

15 packages on CRAN

ClamR

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Implementation of the Wilkinson and Ivany (2002) approach to paleoclimate analysis, applied to isotope data extracted from clams.

GEOmap

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Set of routines for making Map Projections (forward and inverse), Topographic Maps, Perspective plots, Geological Maps, geological map symbols, geological databases, interactive plotting and selection of focus regions.

geomapdata

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Set of data for use in package GEOmap. Includes world map, USA map, Coso map, Japan Map, ETOPO5

geophys

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Codes for analyzing various problems of geophysics, continuum mechanics and gravity models.

PEIP

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Several functions introduced in Aster et al.'s book on inverse theory. The functions are often translations of MATLAB code developed by the authors to illustrate concepts of inverse theory as applied to geophysics. Generalized inversion, tomographic inversion algorithms (conjugate gradients, 'ART' and 'SIRT'), non-linear least squares, first and second order Tikhonov regularization, roughness constraints, and procedures for estimating smoothing parameters are included.

ProfessR

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Programs to determine student grades and create examinations from Question banks. Programs will create numerous multiple choice exams, randomly shuffled, for different versions of same question list.

RFOC

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Graphics for statistics on a sphere, as applied to geological fault data, crystallography, earthquake focal mechanisms, radiation patterns, ternary plots and geographical/geological maps. Non-double couple plotting of focal spheres and source type maps are included for statistical analysis of moment tensors.

RPMG

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Really Poor Man's Graphical User Interface, used to create interactive R analysis sessions with simple R commands.

Rquake

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Hypocenter estimation and analysis of seismic data collected continuously, or in trigger mode. The functions organize other functions from RSEIS and GEOmap to help researchers pick, locate, and store hypocenters for detailed seismic investigation.

RSEIS

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Multiple interactive codes to view and analyze seismic data, via spectrum analysis, wavelet transforms, particle motion, hodograms. Includes general time-series tools, plotting, filtering, interactive display.

RTOMO

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Aimed at seismic tomography, the package plots tomographic images, and allows one to interact and query three-dimensional tomographic models. Vertical cross-sectional cuts can be extracted by mouse click. Geographic information can be added easily.

Rwave

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A set of R functions which provide an environment for the Time-Frequency analysis of 1-D signals (and especially for the wavelet and Gabor transforms of noisy signals). It was originally written for Splus by Rene Carmona, Bruno Torresani, and Wen L. Hwang, first at the University of California at Irvine and then at Princeton University. Credit should also be given to Andrea Wang whose functions on the dyadic wavelet transform are included. Rwave is based on the book: "Practical Time-Frequency Analysis: Gabor and Wavelet Transforms with an Implementation in S", by Rene Carmona, Wen L. Hwang and Bruno Torresani (1998, eBook ISBN:978008053942), Academic Press.

zoeppritz

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Calculate and plot scattering matrix coefficients for plane waves at interface.

seewave

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Functions for analysing, manipulating, displaying, editing and synthesizing time waves (particularly sound). This package processes time analysis (oscillograms and envelopes), spectral content, resonance quality factor, entropy, cross correlation and autocorrelation, zero-crossing, dominant frequency, analytic signal, frequency coherence, 2D and 3D spectrograms and many other analyses.

TauP.R

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Evaluates traveltimes and ray paths using predefined Earth (or other planet) models. Includes phase plotting routines. The IASP91 (Kennett and Engdahl, 1991 <doi:10.1111/j.1365-246X.1991.tb06724.x>) and AK135 (Kennett et al., 1995 <doi:10.1111/j.1365-246X.1995.tb03540.x>) Earth models are included, and most important arrival phases can be evaluated.