1 packages on CRAN
2 packages on Bioconductor
A convenient tool to install and update Bioconductor packages.
Develop an integrative environment where multiple assays are managed and preprocessed for genomic data analysis.
The main function is doppelgangR(), which takes as minimal input a list of ExpressionSet object, and searches all list pairs for duplicated samples. The search is based on the genomic data (exprs(eset)), phenotype/clinical data (pData(eset)), and "smoking guns" - supposedly unique identifiers found in pData(eset).