Peter Hickey

Peter Hickey

2 packages on CRAN

2 packages on Bioconductor

GenomicTuples

bioconductor
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GenomicTuples defines general purpose containers for storing genomic tuples. It aims to provide functionality for tuples of genomic co-ordinates that are analogous to those available for genomic ranges in the GenomicRanges Bioconductor package.

bookdown

cran
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Output formats and utilities for authoring books and technical documents with R Markdown.

bsseq

bioconductor
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A collection of tools for analyzing and visualizing bisulfite sequencing data.

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High-performing functions operating on rows and columns of matrices, e.g. col / rowMedians(), col / rowRanks(), and col / rowSds(). Functions optimized per data type and for subsetted calculations such that both memory usage and processing time is minimized. There are also optimized vector-based methods, e.g. binMeans(), madDiff() and weightedMedian().