R team

Pathway and gene level association test using raw data or summary statistics.

This package contains a proposed revision to the stats::ks.test() function and the associated ks.test.Rd help page. With one minor exception, it does not change the existing behavior of ks.test(), and it adds features necessary for doing one-sample tests with hypothesized discrete distributions. The package also contains cvm.test(), for doing one-sample Cramer-von Mises goodness-of-fit tests.

Fast implementation of hierarchical clustering

Base R functions.

Base R datasets.

R functions for base graphics.

Graphics devices and support for base and grid graphics.

Frequentist and Bayesian linear regression for large data sets. Useful when the data does not fit into memory (for both frequentist and Bayesian regression), to make running time manageable (mainly for Bayesian regression), and to reduce the total running time because of reduced or less severe memory-spillover into the virtual memory. This is an implementation of Merge & Reduce for linear regression as described in Geppert, L.N., Ickstadt, K., Munteanu, A., & Sohler, C. (2020). 'Streaming statistical models via Merge & Reduce'. International Journal of Data Science and Analytics, 1-17, <doi:10.1007/s41060-020-00226-0>.

This package provides user-level functions to manage namespaces not (yet) available in base R: 'registerNamespace', 'unregisterNamespace', 'makeNamespace', and 'getRegisteredNamespace' ('makeNamespaces' is extracted from the R 'base' package source code: src/library/base/R/namespace.R)

Methods for the inference on and the simulation of Gaussian fields are provided, as well as methods for the simulation of extreme value random fields.

Formally defined methods and classes for R objects, plus other programming tools, as described in the reference.

Support for parallel computation, including by forking (taken from package multicore), by sockets (taken from package snow) and random-number generation.

A collection of functions for data manipulation, plotting and statistical computing, to use separately or with the book "Visual Statistics. Use R!": Shipunov (2020) <http://ashipunov.info/shipunov/software/r/r-en.htm>. Most useful functions: Bclust(), Jclust() and BootA() which bootstrap hierarchical clustering; Recode() which does multiple recoding in a fast, simple and flexible way; Misclass() which outputs confusion matrix even if classes are not concerted; Overlap() which measures group separation on any projection; Biarrows() which converts any scatterplot into biplot; and Pleiad() which is fast and flexible correlogram.

R statistical functions.

Statistical Functions using S4 classes.

Interface and language bindings to Tcl/Tk GUI elements.

Tools for package development, administration and documentation.

Compiled translations of messages.

R utility functions.