S. Falcon

S. Falcon

6 packages on Bioconductor

Biobase

bioconductor
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Functions that are needed by many other packages or which replace R functions.

BiocCaseStudies

bioconductor
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Software and data to support the case studies.

GenomicFeatures

bioconductor
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A set of tools and methods for making and manipulating transcript centric annotations. With these tools the user can easily download the genomic locations of the transcripts, exons and cds of a given organism, from either the UCSC Genome Browser or a BioMart database (more sources will be supported in the future). This information is then stored in a local database that keeps track of the relationship between transcripts, exons, cds and genes. Flexible methods are provided for extracting the desired features in a convenient format.

GOstats

bioconductor
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A set of tools for interacting with GO and microarray data. A variety of basic manipulation tools for graphs, hypothesis testing and other simple calculations.

graph

bioconductor
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A package that implements some simple graph handling capabilities.

microRNA

bioconductor
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Different data resources for microRNAs and some functions for manipulating them.