Seth Falcon

This package provides tools for computing and analyzing dependency relationships among R packages. It provides tools for building a graph-based representation of the dependencies among all packages in a list of CRAN-style package repositories. There are also utilities for computing installation order of a given package. If the RCurl package is available, an estimate of the download size required to install a given package and its dependencies can be obtained.

This package provides enhancements on the Sweave() function in the base package. In particular a facility for caching code chunk results is included.

Provides user interface and database connection code for annotation data packages using SQLite data storage.

structures for vocabularies and narratives of views

This package provides classes and methods to support Gene Set Enrichment Analysis (GSEA).

A package that implements some simple capabilities for representing and manipulating hypergraphs.

Embeds the 'SQLite' database engine in R and provides an interface compliant with the 'DBI' package. The source for the 'SQLite' engine is included.

Builds platform design information packages. These consist of a SQLite database containing feature-level data such as x, y position on chip and featureSet ID. The database also incorporates featureSet-level annotation data. The products of this packages are used by the oligo pkg.

Interfaces R with the AT and T graphviz library for plotting R graph objects from the graph package.

Coerce data to LaTeX and HTML tables.