Sonali Arora

Sonali Arora

6 packages on Bioconductor

AnnotationHub

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This package provides a client for the Bioconductor AnnotationHub web resource. The AnnotationHub web resource provides a central location where genomic files (e.g., VCF, bed, wig) and other resources from standard locations (e.g., UCSC, Ensembl) can be discovered. The resource includes metadata about each resource, e.g., a textual description, tags, and date of modification. The client creates and manages a local cache of files retrieved by the user, helping with quick and reproducible access.

AnnotationHubData

bioconductor
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These recipes convert a wide variety and a growing number of public bioinformatic data sets into easily-used standard Bioconductor data structures.

BiocContributions

bioconductor
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A set of tools for cleaning up, post-processing, adding packages to the repository, and for emailing people etc.

biocViews

bioconductor
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structures for vocabularies and narratives of views

GenomeInfoDb

bioconductor
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Contains data and functions that define and allow translation between different chromosome sequence naming conventions (e.g., "chr1" versus "1"), including a function that attempts to place sequence names in their natural, rather than lexicographic, order.

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These recipes convert a variety and a growing number of public proteomics data sets into easily-used standard Bioconductor data structures.