AFMImageAnalyser-class

AFMImageAnalyser

AFMImage

A S4 class to handle the analysis of one AFM Image.

Provides Atomic Force Microscope images analysis such as Gaussian mixes identification, Power
Spectral Density, roughness against lengthscale, experimental variogram and variogram models,
fractal dimension and scale, 2D network analysis. The AFM images can be exported to STL format for 3D
printing.

Mathieu Beauvais

Atomic Force Microscope Image Analysis

Irma Liascukiene

Jessem Landoulsi

AFMImageAnalyser-class function

<dl class="dl-horizontal">
<dt><code>AFMImage</code></dt><dd><code><a rd-options="" href="/link/AFMImage?package=AFM&version=2.0" data-mini-rdoc="AFM::AFMImage">AFMImage</a></code> to be analysed</dd></dl><dt><code>variogramAnalysis</code></dt><dd><code><a rd-options="" href="/link/AFMImageVariogramAnalysis?package=AFM&version=2.0" data-mini-rdoc="AFM::AFMImageVariogramAnalysis">AFMImageVariogramAnalysis</a></code></dd><dt><code>psdAnalysis</code></dt><dd><code><a rd-options="" href="/link/AFMImagePSDAnalysis?package=AFM&version=2.0" data-mini-rdoc="AFM::AFMImagePSDAnalysis">AFMImagePSDAnalysis</a></code></dd><dt><code>fdAnalysis</code></dt><dd><code><a rd-options="" href="/link/AFMImageFractalDimensionsAnalysis?package=AFM&version=2.0" data-mini-rdoc="AFM::AFMImageFractalDimensionsAnalysis">AFMImageFractalDimensionsAnalysis</a></code></dd><dt><code>gaussianMixAnalysis</code></dt><dd><code><a rd-options="" href="/link/AFMImageGaussianMixAnalysis?package=AFM&version=2.0" data-mini-rdoc="AFM::AFMImageGaussianMixAnalysis">AFMImageGaussianMixAnalysis</a></code></dd><dt><code>networksAnalysis</code></dt><dd><code><a rd-options="" href="/link/AFMImageNetworksAnalysis?package=AFM&version=2.0" data-mini-rdoc="AFM::AFMImageNetworksAnalysis">AFMImageNetworksAnalysis</a></code></dd><dt><code>mean</code></dt><dd>the mean of heights of the <code><a rd-options="" href="/link/AFMImage?package=AFM&version=2.0" data-mini-rdoc="AFM::AFMImage">AFMImage</a></code></dd><dt><code>variance</code></dt><dd>the variance of heights of the <code><a rd-options="" href="/link/AFMImage?package=AFM&version=2.0" data-mini-rdoc="AFM::AFMImage">AFMImage</a></code></dd><dt><code>TotalRrms</code></dt><dd>the total Root Mean Square Roughness of the <code><a rd-options="" href="/link/AFMImage?package=AFM&version=2.0" data-mini-rdoc="AFM::AFMImage">AFMImage</a></code> calculated from variance</dd><dt><code>Ra</code></dt><dd>mean roughness or mean of absolute values of heights</dd><dt><code>fullfilename</code></dt><dd>to be removed ?</dd><dt><code>updateProgress</code></dt><dd>a function to update a graphical user interface</dd>

AFMImageAnalyser-class: AFM image analyser class

Description

Usage

Arguments

Slots