ALRAChooseKPlot

object

Index to start plotting singular value spacings from.
The transition from "signal" to "noise" in the is hard to see because the
first singular value spacings are so large. Nicer visualizations result from
skipping the first few. If set to 0 (default) starts from k/2.

start

Combine plots into a single <code><a rd-options="patchwork" href="/link/patchwork?package=Seurat&version=3.1.4&to=patchwork" data-mini-rdoc="patchwork::patchwork">patchwork</a>ed</code>
ggplot object. If <code>FALSE</code>, return a list of ggplot objects

combine

Plots the results of the approximate rank selection process for ALRA.

A toolkit for quality control, analysis, and exploration of single cell RNA sequencing data. 'Seurat' aims to enable users to identify and interpret sources of heterogeneity from single cell transcriptomic measurements, and to integrate diverse types of single cell data. See Satija R, Farrell J, Gennert D, et al (2015) <doi:10.1038/nbt.3192>, Macosko E, Basu A, Satija R, et al (2015) <doi:10.1016/j.cell.2015.05.002>, and Butler A and Satija R (2017) <doi:10.1101/164889> for more details. Please note: SDMTools is available is available from the CRAN archives with install.packages("https://cran.rstudio.com//src/contrib/Archive/SDMTools/SDMTools_1.1-221.2.tar.gz", repos = NULL); it is not in the standard repositories.

Paul Hoffman

Seurat

Tools for Single Cell Genomics

Rahul Satija

Andrew Butler

Tim Stuart

Jeff Farrell

Shiwei Zheng

Christoph Hafemeister

Patrick Roelli

Yuhan Hao

ALRAChooseKPlot function

Combine plots into a single <code><a rd-options='patchwork' href='patchwork'>patchwork</a>ed</code>
ggplot object. If <code>FALSE</code>, return a list of ggplot objects

ALRAChooseKPlot: ALRA Approximate Rank Selection Plot

Description

Usage

Arguments

Value

See Also