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OpenABMCovid19 (version 1.0.1)

Agent-Based Model for Modelling the COVID-19

Description

OpenABM-Covid19 is an agent-based model (ABM) developed to simulate the spread of COVID-19 in a city and to analyse the effect of both passive and active intervention strategies. Interactions between individuals are modelled on networks representing households, work-places and random contacts. The infection is transmitted between these contacts and the progression of the disease in individuals is modelled. Instantaneous contract-tracing and quarantining of contacts is modelled allowing the evaluation of the design and configuration of digital contract-tracing mobile phone apps. Robert Hinch, William J M Probert, et al. (2020) .

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Version

Install

install.packages('OpenABMCovid19')

Monthly Downloads

3

Version

1.0.1

License

GPL-3

Maintainer

Oli Legat

Last Published

July 20th, 2021

Functions in OpenABMCovid19 (1.0.1)

AgeGroupEnum

Age Group Indices
Parameters

R6Class Parameters
Model.one_time_step_results

Gets the simulation results for the current time-step. (wrapper for Model$one_time_step_results())
Network

R6Class Network
Model.one_time_step

Steps the model forward one time step (wrapper for Model$one_time_step())
Parameters.get_param

Gets the value of a parameter (wrapper for Parameters$get_param(param))
Parameters.new

Creates a new OpenABM Parameters object (wrapper for Parameters$new())
Model.get_transmissions

Gets all the transmissions until now (wrapper for Model$get_transmissions())
Model.get_param

Gets the value of a parameter (wrapper for \ codeParameters$get_param(param))
Parameters.set_param

Sets the value of a parameter (wrapper for Parameters$set_param(param,value))
Model

R6Class Model
SAFE_UPDATE_PARAMS

Update-able parameters
Vaccine

R6Class Vaccine
Model.new

Creates a new OpenABM Model (wrapper for Model$new())
VaccineSchedule

R6Class VaccineSchedule
VACCINE_STATUS

Vaccine status
VACCINE_TYPES

Vaccine types
Strain

R6Class Strain
Simulation

R6Class Simulation
Environment

R6Class Environment
COVID19IBM

R6Class COVID19IBM
swig_methods

SWIG Generated S4 methods
Model.results

Gets the simulation results for all time-steps run so far (wrapper for Model$results())
Model.run

Runs the simulation until the end_time specified in the parameters (wrapper for Model$run())
Model.update_running_params

Update a parameter during a simulation
Agent

R6Class Agent
NETWORK_CONSTRUCTIONS

Network construction types