AlignedDataFrame

A data frame containing alignment information.

data

A data frame describing the columns of <code>data</code>,
 and with number of rows of <code>metadata</code> corresponding to number
 of columns of <code>data</code>. . The data frame must contain a column
 <code>labelDescription</code> providing a verbose description of each
 column of <code>data</code>.

metadata

An optional argument, to be used when <code>data</code> is not
 provided, to construct an AlignedDataFrame with the specified number
 of rows.

nrow

Construct an <code>AlignedDataFrame</code> from a data frame and its
 metadata

manip

This package implements sampling, iteration, and input of
FASTQ files. The package includes functions for filtering and
trimming reads, and for generating a quality assessment report.
Data are represented as DNAStringSet-derived objects, and
easily manipulated for a diversity of purposes.  The package
also contains legacy support for early single-end, ungapped
alignment formats.

Bioconductor Package Maintainer

ShortRead

FASTQ input and manipulation

AlignedDataFrame function

Construct an <code>AlignedDataFrame</code> from a data frame and its
 metadata

AlignedDataFrame: (Legacy) AlignedDataFrame constructor

Description

Usage

Arguments

Value