AlleleSummation: The AlleleSummation class

Description

Package: aroma.affymetrix Class AlleleSummation

Object ~~| ~~+--ParametersInterface ~~~~~~~| ~~~~~~~+--Model ~~~~~~~~~~~~| ~~~~~~~~~~~~+--UnitModel ~~~~~~~~~~~~~~~~~| ~~~~~~~~~~~~~~~~~+--AlleleSummation

Directly known subclasses:

public abstract static class AlleleSummation extends UnitModel

This class takes allele-specific chip effect estimates of a SnpChipEffectSet and returns a CnChipEffectSet holding the summed allele estimates.

Usage

AlleleSummation(dataSet=NULL, ignoreNAs=TRUE, ...)

Arguments

dataSet

A SnpChipEffectSet.

ignoreNAs

If TRUE, missing values are excluded when summing the signals from the two alleles.

...

Arguments passed to UnitModel.

Fields and Methods

Methods:

	`findUnitsTodo`
-
`getChipEffectSet`	-
	`process`
-

Methods inherited from UnitModel: findUnitsTodo, getAsteriskTags, getFitSingleCellUnitFunction, getParameters Methods inherited from Model: as.character, fit, getAlias, getAsteriskTags, getDataSet, getFullName, getName, getPath, getRootPath, getTags, setAlias, setTags Methods inherited from ParametersInterface: getParameterSets, getParameters, getParametersAsString Methods inherited from Object: $, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clearLookupCache, clone, detach, equals, extend, finalize, getEnvironment, getFieldModifier, getFieldModifiers, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, save, asThis