AromaTabularBinaryFile: The AromaTabularBinaryFile class
Description
Package: aroma.core
Class AromaTabularBinaryFile
Object
~~|
~~+--GenericDataFile
~~~~~~~|
~~~~~~~+--GenericTabularFile
~~~~~~~~~~~~|
~~~~~~~~~~~~+--AromaTabularBinaryFile
Directly known subclasses:
AromaCellPositionFile, AromaCellSequenceFile, AromaCellTabularBinaryFile, AromaMicroarrayTabularBinaryFile, AromaUgpFile, AromaUnitCallFile, AromaUnitChromosomeTabularBinaryFile, AromaUnitFracBCnBinaryFile, AromaUnitGenotypeCallFile, AromaUnitSignalBinaryFile, AromaUnitTabularBinaryFile, AromaUnitTotalCnBinaryFile
public static class AromaTabularBinaryFile
extends GenericTabularFile
A AromaTabularBinaryFile represents a file with a binary format.
It has a well defined header, a data section, and a footer.Usage
AromaTabularBinaryFile(...)
Fields and Methods
Methods:
rll{
[ -
[[ -
[<- -
allocate Creates an AromaTabularBinaryFile.
as.character -
colMeans -
colMedians -
colStats -
colSums -
dimnames<- -
getBytesPerColumn -
getColClasses -
getColumnNames -
importFrom -
lapply -
nbrOfColumns -
nbrOfRows -
readColumns -
readFooter Reads the file footer in XML format into a named nested list.
subset -
summary -
writeFooter Writes a named nested list to the file footer in XML format.
}
Methods inherited from GenericTabularFile:
as.character, dim, extractMatrix, getColumnNames, getColumnNameTranslator, nbrOfColumns, nbrOfRows, readColumns, readDataFrame, setColumnNameTranslator, translateColumnNames
Methods inherited from GenericDataFile:
compareChecksum, copyTo, equals, fromFile, getAlias, getAttribute, getAttributes, getChecksum, getCreatedOn, getFilename, getFileSize, getFileType, getFullName, getFullNameTranslator, getLastAccessedOn, getLastModifiedOn, getName, getPath, getPathname, getTags, gunzip, gzip, hasBeenModified, hasTag, hasTags, isFile, readChecksum, renameTo, renameToUpperCaseExt, setAlias, setAttribute, setAttributes, setAttributesBy, setAttributesByTags, setFullName, setFullNameTranslator, setName, testAttributes, validateChecksum, writeChecksum
Methods inherited from Object:
asThis, $, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clone, detach, equals, extend, finalize, gc, getEnvironment, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, save