Package: aroma.core Class AromaUnitSignalBinarySet
Object
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~~+--FullNameInterface
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~~~~~~~+--GenericDataFileSet
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~~~~~~~~~~~~+--GenericTabularFileSet
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~~~~~~~~~~~~~~~~~+--AromaTabularBinarySet
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~~~~~~~~~~~~~~~~~~~~~~+--AromaUnitSignalBinarySet
Directly known subclasses: AromaUnitCallSet, AromaUnitFracBCnBinarySet, AromaUnitGenotypeCallSet, AromaUnitPscnBinarySet, AromaUnitTotalCnBinarySet
public static class AromaUnitSignalBinarySet extends AromaTabularBinarySet
An AromaUnitSignalBinarySet object represents a set of
AromaUnitSignalBinaryFiles with identical chip types.
AromaUnitSignalBinarySet(...)Arguments passed to AromaTabularBinarySet.
Methods:
byName |
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getAromaUgpFile |
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getChipType |
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getPlatform |
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writeDataFrame |
Writes the data set as a tab-delimited text file. |
Methods inherited from AromaTabularBinarySet: getDefaultFullName, getRootName, setAttributesBy, setAttributesBySampleAnnotationFile, setAttributesBySampleAnnotationSet, setAttributesByTags
Methods inherited from GenericTabularFileSet: extractMatrix, calculateAverageColumnAcrossFiles
Methods inherited from GenericDataFileSet: [, [[, anyDuplicated, anyNA, append, appendFiles, appendFullNamesTranslator, appendFullNamesTranslatorByNULL, appendFullNamesTranslatorByTabularTextFile, appendFullNamesTranslatorByTabularTextFileSet, appendFullNamesTranslatorBydata.frame, appendFullNamesTranslatorByfunction, appendFullNamesTranslatorBylist, as.character, as.list, byName, byPath, c, clearCache, clearFullNamesTranslator, clone, copyTo, dsApply, dsApplyInPairs, duplicated, equals, extract, findByName, findDuplicated, getChecksum, getChecksumFileSet, getChecksumObjects, getDefaultFullName, getFile, getFileClass, getFileSize, getFiles, getFullNames, getNames, getOneFile, getPath, getPathnames, getSubdirs, gunzip, gzip, hasFile, indexOf, is.na, names, nbrOfFiles, rep, resetFullNames, setFullNamesTranslator, sortBy, unique, update2, updateFullName, updateFullNames, validate, getFullNameTranslatorSet, getParentName
Methods inherited from FullNameInterface: appendFullNameTranslator, appendFullNameTranslatorByNULL, appendFullNameTranslatorByTabularTextFile, appendFullNameTranslatorByTabularTextFileSet, appendFullNameTranslatorBycharacter, appendFullNameTranslatorBydata.frame, appendFullNameTranslatorByfunction, appendFullNameTranslatorBylist, clearFullNameTranslator, clearListOfFullNameTranslators, getDefaultFullName, getFullName, getFullNameTranslator, getListOfFullNameTranslators, getName, getTags, hasTag, hasTags, resetFullName, setFullName, setFullNameTranslator, setListOfFullNameTranslators, setName, setTags, updateFullName
Methods inherited from Object: $, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clearLookupCache, clone, detach, equals, extend, finalize, getEnvironment, getFieldModifier, getFieldModifiers, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, names, objectSize, print, save, asThis