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vegan (version 1.6-2)
Community Ecology Package
Description
Ordination methods and other useful functions for community and vegetation ecologists.
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Install
install.packages('vegan')
Monthly Downloads
110,476
Version
1.6-2
License
GPL2
Maintainer
Jari Oksanen
Last Published
June 6th, 2025
Functions in vegan (1.6-2)
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anova.cca
Permutation Test for Constrained Correspondence Analysis, Redundancy Analysis and Constrained Analysis of Principal Coordinates
anosim
Analysis of Similarities
capscale
[Partial] Constrained Analysis of Principal Coordinates
mantel
Mantel Test for Two Dissimilarity Matrices
fisherfit
Fit Fisher's Logseries and Preston's Lognormal model to Abundance Data
decostand
Standardizaton Methods for Community Ecology
read.cep
Reads a CEP (Canoco) data file
distconnected
Connectedness and Minimum Spanning Tree for Dissimilarities
initMDS
Random Start and Axis Scaling for isoMDS
vegdist
Dissimilarity Indices for Community Ecologists
stepacross
Stepacross as Flexible Shortest Paths or Extended Dissimilarities
diversity
Ecological Diversity Indices and Rarefaction Species Richness
cca
[Partial] [Constrained] Correspondence Analysis and Redundancy Analysis
vegan-internal
Internal vegan functions
make.cepnames
Abbreviates a Botanical or Zoological Latin Name into an Eight-character Name
wascores
Weighted Averages Scores for Species
rankindex
Compares Dissimilarity Indices for Gradient Detection
decorana
Detrended Correspondence Analysis and Basic Reciprocal Averaging
specpool
Extrapolated Species Richness in a Species Pool
plot.cca
Plot or Extract Results of Constrained Correspondence Analysis or Redundancy Analysis
scores
Get Species or Site Scores from an Ordination
ordiplot
Alternative plot and identify Functions for Ordination
dune
Vegetation and Environment in Dutch Dune Meadows.
ordihull
Add Graphical Items to Ordination Diagrams
BCI
Barro Colorado Island Tree Counts
procrustes
Procrustes Rotation of Two Configurations
specaccum
Species Accumulation Curves
ordisurf
Smooths Variables and Plots Contours on Ordination.
varespec
Vegetation and environment in lichen pastures
vegemite
Prints a Compact, Ordered Vegetation Table
radfit
Rank -- Abundance or Dominance / Diversity Models
envfit
Fits an Environmental Vector or Factor onto an Ordination