CNSet-class

CNSet

[,CNSet-method

[,CNSet,ANY-method

A,CNSet-method

A<-,CNSet-method

allele,CNSet-method

B,CNSet-method

B<-,CNSet-method

batch,CNSet-method

batchNames,CNSet-method

batchNames<-,CNSet-method

batchStatistics,CNSet-method

batchStatistics<-,CNSet,AssayData-method

calls,CNSet-method

calls<-,CNSet,matrix-method

close,CNSet-method

coerce,CNSetLM,CNSet-method

coerce,CNSet,CopyNumberSet-method

coerce,CNSet,oligoSnpSet

coerce,CNSet,oligoSnpSet-method

confs,CNSet-method

confs<-,CNSet,matrix-method

corr,CNSet,character-method

flags,CNSet-method

initialize,CNSet-method

initialize,CNSetLM-method

nu,CNSet,character-method

open,CNSet-method

phi,CNSet,character-method

show,CNSet-method

snpCallProbability,CNSet-method

sigma2,CNSet,character-method

tau2,CNSet,character-method

updateObject,CNSet-method

CNSet is a container for intermediate data and parameters
	 pertaining to allele-specific copy number estimation. Methods
	 for CNSet objects, including accessors for linear model
	 parameters and allele-specific copy number are included here.

classes

A package to analyze oligonucleotide arrays
        (expression/SNP/tiling/exon) at probe-level. It currently
        supports Affymetrix (CEL files) and NimbleGen arrays (XYS
        files).

Benilton Carvalho

oligo

Preprocessing tools for oligonucleotide arrays

CNSet-class function

An object from the class is not generally intended to
		 be initialized by the user, but returned by the
		 <code>genotype</code> function in the <code>crlmm</code> package.		 The following creates a very basic <code>CNSet</code> with
		 <code>assayData</code> containing the required elements.	 <code>new(CNSet, alleleA=new("matrix"), alleleB=new("matrix"), call=new("matrix"),
		 callProbability=new("matrix"), batch=new("factor"))</code>

Objects from the Class

Class "CNSet"

CNSet-class: Class "CNSet"

Description

Arguments

Objects from the Class

Examples