ICAMS (version 2.1.2)

CatalogRowOrder: Standard order of row names in a catalog.

Description

This data is designed for those who need to create their own catalogs from formats not supported by this package. The rownames denote the mutation types. For example, for SBS96 catalogs, the rowname AGAT represents a mutation from AGA > ATA.

Usage

catalog.row.order
catalog.row.order.sp

Format

A list of character vectors indicating the standard orders of row names in catalogs.

An object of class list of length 8.

An object of class list of length 1.

Examples

# NOT RUN {
catalog.row.order$SBS96
# "ACAA" "ACCA" "ACGA" "ACTA" "CCAA" "CCCA" "CCGA" "CCTA" ...
# There are altogether 96 row names to denote the mutation types
# in SBS96 catalog.

catalog.row.order.sp$ID83
# "DEL:C:1:0" "DEL:C:1:1" "DEL:C:1:2" "DEL:C:1:3" ...
# There are altogether 83 row names to denote the mutation types
# in ID83 catalog.
# }