aroma.affymetrix (version 2.11.1)

ChipEffectGroupMerge: The ChipEffectGroupMerge class

Description

Package: aroma.affymetrix Class ChipEffectGroupMerge Object ~~| ~~+--ParametersInterface ~~~~~~~| ~~~~~~~+--AromaTransform ~~~~~~~~~~~~| ~~~~~~~~~~~~+--Transform ~~~~~~~~~~~~~~~~~| ~~~~~~~~~~~~~~~~~+--ChipEffectTransform ~~~~~~~~~~~~~~~~~~~~~~| ~~~~~~~~~~~~~~~~~~~~~~+--ChipEffectGroupMerge Directly known subclasses: SnpChipEffectGroupMerge public static class ChipEffectGroupMerge extends ChipEffectTransform This class represents a method that merges chip effects across groups unit by unit.

Usage

ChipEffectGroupMerge(dataSet=NULL, fcn=NULL, ...)

Arguments

dataSet

A ChipEffectSet.

fcn

A function used to "merge" groups.

...

Additional arguments passed to the constructor of ChipEffectTransform.

Fields and Methods

Methods: rll{ getCdf - getMergeFunction - process Normalizes the data set. setMergeFunction - }

Methods inherited from ChipEffectTransform: getRootPath

Methods inherited from Transform: getOutputDataSet, getOutputFiles

Methods inherited from AromaTransform: as.character, findFilesTodo, getAsteriskTags, getExpectedOutputFiles, getExpectedOutputFullnames, getFullName, getInputDataSet, getName, getOutputDataSet, getOutputDataSet0, getOutputFiles, getPath, getRootPath, getTags, isDone, process, setTags

Methods inherited from ParametersInterface: getParameterSets, getParameters, getParametersAsString

Methods inherited from Object: $, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clearLookupCache, clone, detach, equals, extend, finalize, gc, getEnvironment, getFieldModifier, getFieldModifiers, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, save, asThis