Object
~~|
~~+--ChromosomalModel
Directly known subclasses:
CbsModel, CopyNumberChromosomalModel, CopyNumberSegmentationModel, GladModel, HaarSegModel, RawCopyNumberModel
public abstract static class ChromosomalModel
extends Object
This abstract class represents a chromosomal model.ChromosomalModel(cesTuple=NULL, tags="*", genome="Human", chromosomes=NULL, ...)character string specifying what genome is process.vector specifying which chromosomes
to process.fit -
getChipType Gets a label for all chip types merged.
getChipTypes -
getChromosomes Gets the chromosomes to be processed.
getFullName -
getFullNames -
getGenome -
getName -
getNames Gets the names of the arrays.
getPath -
getSets -
getTags -
indexOf -
nbrOfArrays Gets the number of arrays.
nbrOfChipTypes Gets the number of chip types.
setChromosomes -
setGenome -
}Methods inherited from Object: $, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clearLookupCache, clone, detach, equals, extend, finalize, getEnvironment, getFieldModifier, getFieldModifiers, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, save, asThis