phylotaR (version 1.0.0)

ClstrArc-class: Cluster record archive

Description

Multiple cluster records.

Usage

# S4 method for ClstrArc
as.character(x)
# S4 method for ClstrArc
show(object)
# S4 method for ClstrArc
print(x)
# S4 method for ClstrArc
str(object, max.level = 2L, ...)
# S4 method for ClstrArc
summary(object)
# S4 method for ClstrArc,character
[[(x, i)
# S4 method for ClstrArc,character,missing,missing
[(x, i, j, ..., drop = TRUE)

Arguments

x

ClstrArc object

object

ClstrArc object

max.level

Maximum level of nesting for str()

...

Further arguments for str()

i

cid(s)

j

Unused

drop

Unused

Slots

ids

Vector of cluster record IDs

clstrs

List of ClstrArc named by ID

See Also

Other run-public: ClstrRec-class, Phylota-class, SeqArc-class, SeqRec-class, TaxDict-class, TaxRec-class, clusters2_run, clusters_run, parameters_reset, reset, restart, run, setup, taxise_run

Examples

# NOT RUN {
data('aotus')
clstrarc <- aotus@clstrs
# this is a ClstrArc object
# it contains cluster records
show(clstrarc)
# you can access its different data slots with @
clstrarc@ids     # unique cluster ID
clstrarc@clstrs  # list of cluster records
# access cluster records [[
(clstrarc[[clstrarc@ids[[1]]]])  # first cluster record
# generate new cluster archives with [
(clstrarc[clstrarc@ids[1:10]])  # first 10 clusters
# }