dcGOR (version 1.0.2)

Coutput-method: Methods defined for S4 class Coutput

Description

Methods defined for S4 class Coutput.

Usage

## S3 method for class 'Coutput':
show(object)
## S3 method for class 'Coutput':
ratio(x)
## S3 method for class 'Coutput':
zscore(x)
## S3 method for class 'Coutput':
pvalue(x)
## S3 method for class 'Coutput':
adjp(x)
## S3 method for class 'Coutput':
cnetwork(x)
## S3 method for class 'Coutput':
write(x, file = "Coutput.txt", saveBy = c("adjp",
"pvalue", "zscore", "ratio"), verbose = T)

Arguments

object

an object of S4 class Coutput. Usually this is an output from dcRWRpipeline

x

an object of S4 class Coutput. Usually this is part of the output from dcRWRpipeline

saveBy

which statistics will be saved. It can be "pvalue" for p value, "adjp" for adjusted p value, "zscore" for z-score, "ratio" for ratio

file

a character specifying a file name written into. By default, it is 'Coutput.txt'

verbose

logical to indicate whether the messages will be displayed in the screen. By default, it sets to true for display

Value

• write(x) also returns a symmetrix matrix storing the specific statistics

See Also

Coutput-class