MMDiff (version 1.12.0)

DBAmmd-class: Class DBAmmd

Description

The DBAmmd Class defines a container for differential binding analysis using MMDiff2. For this class a number of methods is foreseen, among which accessors for every slot. As MetaData, it needs to contain the path to the data directory and the name of a sampleSheet csv file.

Value

• DBAmmd Object

Constructor

DBAmmd(){returns an empty DBAmmd Object.} DBAmmd(MetaData){ initializes a DBAmmd Object for a new Experiment. (See below and the package vignette for more details.)}

See Also

DBAmmd-Accessors,getPeakReads

Examples

## Example using a small data set provided in the MMDiffBamSubset package

# setting the Experiment meta data:
ExpData <- list(dataDir=system.file("extdata", package="MMDiffBamSubset"),
           sampleSheet="Cfp1.csv")

MetaData <- list('ExpData' = ExpData)

# Creating a DBAmmd data set:
MMD <- DBAmmd(MetaData)