DESeq2Fit: Analysis of LPS RFI RNA-seq data Using DESeq2
Description
This function analyzes the LPS RFI RNA-seq data and simulated datasets using
DESeq, the Quasi-likelihood F-test in DESeq2
package.
Usage
DESeq2Fit(counts, design, Effect)
Arguments
counts
a matrix of count data.
design
a design matrix.
Effect
the effect used to simulate data, either line2, or
time. This effect is considered as the main factor of interest where the
status of DE and EE genes was specified.
@param covset a data frame contain covariate set.