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regionReport (version 1.6.5)

Generate HTML or PDF reports for a set of genomic regions or DESeq2/edgeR results

Description

Generate HTML or PDF reports to explore a set of regions such as the results from annotation-agnostic expression analysis of RNA-seq data at base-pair resolution performed by derfinder. You can also create reports for DESeq2 or edgeR results.

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Version

Version

1.6.5

License

Artistic-2.0

Issues

1

Pull Requests

0

Stars

9

Forks

4

Maintainer

Leonardo Collado-Torres

Last Published

February 15th, 2017

Functions in regionReport (1.6.5)

edgeReport

Generate a HTML/PDF report exploring edgeR results
load_install

Attempt to load the namespace of a package and install it if it's missing
regionReport-defunct

Defunct functions in package regionReport
regionReport-package

Generate HTML or PDF reports for a set of regions or DESeq2/edgeR results.
renderReport

Generate a HTML/PDF report exploring a set of genomic regions
derfinderReport

Generate a HTML/PDF report exploring the basic results from derfinder
DESeq2Report

Generate a HTML/PDF report exploring DESeq2 results
with_wd

Temporarily evaluate an expression in a directory