helix

fasta

known

This data set contains two sets of helices and a multiple sequence alignment. 
 The two sets of helices are <code>helices</code> and <code>known</code> which are
 helices predicted to occur for RNA sequence RF00458 by the program TRANSAT,
 and experimentally proposed structure of the same sequence, respectively.
 <code>fasta</code> is the seed homologues for the multiple sequence alignment
 obtained from the RFAM database.

datasets

Example Data

A package for RNA basepair analysis, including the visualization of basepairs as arc diagrams for easy comparison and annotation of sequence
and structure.  Arc diagrams can additionally be projected onto multiple sequence alignments to assess basepair conservation and
covariation, with numerical methods for computing statistics for each.

Daniel Lai

R4RNA

An R package for RNA visualization and analysis

Example Data function

<code>helix</code> and <code>known</code> are 4 column data frames, where columns
 i and j denote the left-most and right-most basepairs, the
 length is the number of consecutive basepairs the helix
 contains, and the value is assigned to each helix on a row. <code>fasta</code> is an array of named characters of length 7.

Format

This data set contains two sets of helices and a multiple sequence alignment. 
 The two sets of helices are <code>helices</code> and <code>known</code> which are
 helices predicted to occur for RNA sequence RF00458 by the program TRANSAT,
 and experimentally proposed structure of the same sequence, respectively.
 <code>fasta</code> is the seed homologues for the multiple sequence alignment
 obtained from the RFAM database.

Example Data: Helices predicted by TRANSAT with p-values

Description

Usage

Arguments

Value

Format

References