ScreenClean (version 1.0.1)

FindCG: Find the connected subgraphs with a certain number of nodes

Description

FindCG is used to find all the connected subgraphs with a certain number of nodes.

Usage

FindCG(adjacency.matrix, cg.initial)

Arguments

adjacency.matrix

p by p adjacency matrix of an undirected graph. It must be symmetric.

cg.initial

It could be 1:p or a matrix, whose elements are positive integers from 1 to p. If it is a length p vector, FindCG converts it into a matrix with one column. For a matrix with k columns, FindCG reads its rows as th indices of a collection of connected subgraphs with k nodes.

Value

cg.new

If the input is a matrix with k columns and stores the indices of all the size k connected subgraphs, the output is a matrix with k+1 columns storing the indices of all the connected subgraphs with k+1 nodes.

See Also

FindAllCG

Examples

require(MASS)
require(Matrix)
p <- 10
Omega <- sparseMatrix(c(1:(p-1),2:p),c(2:p,1:(p-1)),x=1)
cg.2 <- FindCG(Omega,c(1:p))
cg.3 <- FindCG(Omega,cg.2)