GWASTools (version 1.18.0)

GWASTools-defunct: Defunct Functions in Package ‘GWASTools’

Description

These functions are defunct and no longer available.

Details

The following functions are defunct; use the replacement indicated below:

• pedigreeClean: pedigreeCheck
• pedigreeFindDuplicates: pedigreeCheck
• ncdfCreate: createDataFile
• ncdfAddData: createDataFile
• ncdfAddIntensity: createAffyIntensityFile
• ncdfCheckGenotype: checkGenotypeFile
• ncdfCheckIntensity: checkIntensityFile
• ncdfSetMissingGenotypes: setMissingGenotypes
• gdsSetMissingGenotypes: setMissingGenotypes
• ncdfImputedDosage: imputedDosageFile
• gdsImputedDosage: imputedDosageFile
• gdsCheckImputedDosage: checkImputedDosageFile
• assocTestRegression: assocRegression
• assocTestCPH: assocCoxPH
• assocTestFisherExact: batchFisherTest
• gwasExactHW: exactHWE
• ncdfSubset: gdsSubset
• ncdfSubsetCheck: gdsSubsetCheck