GcContentNormalization2: The GcContentNormalization2 class

Description

Package: aroma.affymetrix Class GcContentNormalization2 Object ~~| ~~+--ParametersInterface ~~~~~~~| ~~~~~~~+--AromaTransform ~~~~~~~~~~~~| ~~~~~~~~~~~~+--Transform ~~~~~~~~~~~~~~~~~| ~~~~~~~~~~~~~~~~~+--ChipEffectTransform ~~~~~~~~~~~~~~~~~~~~~~| ~~~~~~~~~~~~~~~~~~~~~~+--AdditiveCovariatesNormalization ~~~~~~~~~~~~~~~~~~~~~~~~~~~| ~~~~~~~~~~~~~~~~~~~~~~~~~~~+--GcContentNormalization2 Directly known subclasses: public static class GcContentNormalization2 extends AdditiveCovariatesNormalization This class represents a normalization method that corrects for annotation-data covariate effects on copy-number chip-effect estimates.

Usage

GcContentNormalization2(...)

Arguments

...

Arguments passed to the constructor of AdditiveCovariatesNormalization.

Fields and Methods

Methods: rll{ plotCovariateEffects - }

Methods inherited from AdditiveCovariatesNormalization: getAsteriskTags, getCdf, getCovariates, getOutputDataSet00, getParameters, process

Methods inherited from ChipEffectTransform: getRootPath

Methods inherited from Transform: getOutputDataSet, getOutputFiles

Methods inherited from AromaTransform: as.character, findFilesTodo, getAsteriskTags, getExpectedOutputFiles, getExpectedOutputFullnames, getFullName, getInputDataSet, getName, getOutputDataSet, getOutputDataSet0, getOutputFiles, getPath, getRootPath, getTags, isDone, process, setTags

Methods inherited from ParametersInterface: getParameterSets, getParameters, getParametersAsString

Methods inherited from Object: $, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clearLookupCache, clone, detach, equals, extend, finalize, gc, getEnvironment, getFieldModifier, getFieldModifiers, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, save, asThis