aroma.affymetrix (version 1.6.0)

HetLogAddPlm: The HetLogAddPlm class

Description

Package: aroma.affymetrix Class HetLogAddPlm Object ~~| ~~+--Model ~~~~~~~| ~~~~~~~+--UnitModel ~~~~~~~~~~~~| ~~~~~~~~~~~~+--MultiArrayUnitModel ~~~~~~~~~~~~~~~~~| ~~~~~~~~~~~~~~~~~+--ProbeLevelModel ~~~~~~~~~~~~~~~~~~~~~~| ~~~~~~~~~~~~~~~~~~~~~~+--RmaPlm ~~~~~~~~~~~~~~~~~~~~~~~~~~~| ~~~~~~~~~~~~~~~~~~~~~~~~~~~+--HetLogAddPlm Directly known subclasses: HetLogAddCnPlm, HetLogAddSnpPlm public static class HetLogAddPlm extends RmaPlm This class represents a log-additive model similar to the one described in Irizarry et al (2003), except that the errors may have different variances for different probes.

Usage

HetLogAddPlm(...)

Arguments

...

Arguments passed to RmaPlm.

Fields and Methods

Methods: rll{ getAsteriskTags - } Methods inherited from RmaPlm: getAsteriskTags, getCalculateResidualsFunction, getRlmFitFunctions Methods inherited from ProbeLevelModel: calculateResidualSet, calculateWeights, fit, getAsteriskTags, getCalculateResidualsFunction, getChipEffectSet, getProbeAffinityFile, getResidualSet, getWeightsSet Methods inherited from MultiArrayUnitModel: getListOfPriors, setListOfPriors, validate Methods inherited from UnitModel: findUnitsTodo, getAsteriskTags, getFitSingleCellUnitFunction Methods inherited from Model: fit, getAlias, getAsteriskTags, getDataSet, getFullName, getName, getPath, getRootPath, getTags, setAlias, setTags Methods inherited from Object: asThis, $, $<-, [[, [[<-, as.character, attach, attachLocally, clearCache, clone, detach, equals, extend, finalize, gc, getEnvironment, getFields, getInstantiationTime, getStaticInstance, hasField, hashCode, ll, load, objectSize, print, registerFinalizer, save

See Also

RmaPlm.